miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|52515593|gb|CV262618.1|CV262618 TTTTTTTTTTTTTTTTTTGATTCATTTCACTTATACTTAATTTAATTGTAATTTAATTACAGTAGGTTATAAATAGCTGT
TATAGAGGAGGATAGAAATAAGACGACAAGGAAAAGCAAAGGAAAAGTAAGCCTCCAATGGTTGCAACTGTCCCTTGAGA
GATCTTAGACGCCAGAAGGCTTCCACCAACCACTGCCAGGGAGGTGCAGATGGTATGTCCCAAAGTAGCCCCCACAGCTA
CGCCGATGGCATTTTTGTGTGTTGCCAGAGCAATTGTAGCAATCTGGCTACGGTCTCCCCACTCAGCTAAAAAAGTTAAA
ATAAATGATTCCAAAAATATTGGTGTGCAAAATCTTGAAAAGTAATGGCGGAAGGATGTTTTCCCTTGGCCAGCCTCAAG
CTTTTCTTCTACTTCTTCCATTTCTTTTTTCTGTGATGATTTTGAATCCGATCTCCAGGCAATGTAAAGTAGCCGCAGGC
CAAAAAATGCATAAAGAACGGTGGCTGCACTATTTGTATGCTTCCTTGAAATTAAATTTGGCACGATTCTACCAAGTCCA
GTAGAAAGTACCTAAATGACATGCACAACAGCTTTAAGCTTCACCAACATTGAGAATAAGAAAAGTTCAGTGTAGTTGCT
GGCTGGACCATTCCATTCAATGCCTTGCAGTGTCAGAAGAAAGAAAGGAGAGGGAGAGGGAGAGAGAGAACAAAGTCGGA
GATGGTAAGGGTTCTTTGGCTGAAGTAGAAACTCGCTGACCAAAATCATTGACAAGCTGGCAAAGAAAGCATCAAAAATT
CCAAGCCCCGATTCCAATTTAAGACCATTACCAGCAGATTTGGCATCACCTCCATTTCTAACGACCTGCATCCATCCATC
CAT




Most similar to sp|Q6ZIB9|GDT14_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp.
           japonica GN=Os08g0528500 PE=2 SV=1
          Length = 282

 Score =  249 bits (637), Expect = 1e-65
 Identities = 146/255 (57%), Positives = 163/255 (63%), Gaps = 11/255 (4%)
 Frame = -1

Query: 814 ESGLGIFDAFFASLSMILVSEFLLQPKNPYHLRLCXXXXXXXXXXXLTLQGIEWNGPASN 635
           ++GLG+FDAFFASLSMILVSE                                       
Sbjct: 66  KAGLGLFDAFFASLSMILVSEI-------------------------------------- 87

Query: 634 YTELFLFSMLVKLK-----------AVVHVI*VLSTGLGRIVPNLISRKHTNSAATVLYA 488
             E F+ + L+ ++           + + V+ +LSTGLGRIVPNLISRKHTNSAATVLYA
Sbjct: 88  GDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLISRKHTNSAATVLYA 147

Query: 487 FFGLRLLYIAWRXXXXXXXXXXXXXXXXXXEAGQGKTSFRHYFSRFCTPIFLESFILTFL 308
           FFGLRLLYIAWR                  EAGQGK++FR  FSRFCTPIFLESF+LTFL
Sbjct: 148 FFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQGKSTFRRIFSRFCTPIFLESFVLTFL 207

Query: 307 AEWGDRSQIATIALATHKNAIGVAVGATLGHTICTSLAVVGGSLLASKISQGTVATIGGX 128
           AEWGDRSQIATIALATHKNA+GVAVGATLGHTICTS AVVGGS+LASKISQGTVATIGG 
Sbjct: 208 AEWGDRSQIATIALATHKNAVGVAVGATLGHTICTSFAVVGGSMLASKISQGTVATIGGL 267

Query: 127 XXXXXXXXXXXYPPL 83
                      YPPL
Sbjct: 268 LFLGFSLSSYFYPPL 282